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Pre-breeding:
Bridging Genebanks and Breeders (and Farmers)

Elite varieties and landraces of crops are closely related and can be easily crossed with each other to create new varieties. But this often is not the case with crop wild relatives (CWR) because they are not so closely related to the crop. So, while CWR are great for diversity, they are difficult for breeders to work with. Some are too unruly, or we simply do not know (yet!) enough about them.

Video

Crop Trust End-to-End Support

From Crop Wild Relative to Variety, in Farmers’ Fields and Beyond

The BOLD Project is going back to basics with pre-breeding to give plant breeders and farmers the materials and knowledge they need to face future challenges with confidence. The following sections explain how BOLD is going about this vital work.

If you haven’t watched the video that explains pre-breeding, we really recommend that you do before you continue reading this section – it will really help you understand the challenges and importance of this activity.

Widening the Crop Diversity Available

Plant breeders need as wide a range of diversity as possible to use in their breeding programs to develop new crop varieties that are resilient to the changes being caused by runaway climate change.

 

Working closely with genebanks, and building on the decade-long Crop Wild Relatives Project, the BOLD pre-breeding partners identify the plants that have traits that are of interest to them, and to farmers. This involves growing out the seeds in the field and observing the resulting crop, often over several years. This is costly and labor-intensive work.

 

The next step is to cross plants with the desired characteristics–such as disease resistance or drought tolerance–with other varieties that already have key characteristics such as high yield and ease of harvesting.

 

But working with crop wild relatives is challenging and time-consuming. Most crop wild relatives have characteristics that farmers really don’t want. For example, their seeds or fruits don’t all mature at the same time, the plants are different heights, and their seeds are usually much smaller than their domesticated relatives. So pre-breeders cross the wild relatives with elite varieties or landraces and select the resulting plants that are closest to the ideal they are looking for. Sometimes, crosses have difficulty producing viable seed, so they need extra help through a process called embryo rescue.

 

And they then have to go through this crossing process again and again, until they have a product that has most of the characteristics of the elite variety–high yield, for example–plus the desirable characteristic of the wild relative–disease resistance, say.

Growing a diversity of crops and several varieties of each crop helps farmers avoid the risk of catastrophic crop failure if there is a pest outbreak or drought, for example. These are some of the different varieties of maize and other crops grown by a small-scale farmer on her family plot (chakra) in the Ecuadorian highlands. Photo: LM Salazar / Crop Trust

Evaluating New Diversity for Adaptation and Performance

Pre-breeding produces a lot of new “families” of plants that have a mix of the characteristics of their parents, wild and cultivated.

 

These have to be tested in the real world to see how they perform. Examples from Crop Trust-supported projects include:

  • Screening pre-bred potato clones for bacterial wilt resistance, late blight resistance and heat tolerance
  • Participatory evaluation of rice in Vietnam by farmers, including adaptation and advanced yield trials
  • Testing new alfalfa diversity in farming systems that are transitioning from irrigated to rainfed agriculture
    This then leads into the next phase, developing new “elite varieties” from the best of this material.
Evaluation of new diversity can be done by researchers on research stations… or in farmers’ fields. Under the BOLD Project pre-breeding efforts, farmers actively participate in evaluating the plants and picking the ones that best meet their needs under their own conditions. This is pictured here: a group of stakeholders discusses the performance of different durum wheats in southern Morocco. Photo: LM Salazar / Crop Trust

Developing New Varieties and Making Them Available to Farmers

Once the initial screening has been done and promising materials have been identified, the next step is to turn these into “varieties” that can be released to farmers.

 

In most countries, “varieties” must be stable (i.e. they don’t change from one generation to the next) and uniform (all the plants look alike and have the same characteristics before they can be released to farmers). And, of course, they must perform well in farmers’ fields under a range of conditions.

 

Getting here from the initial crosses takes many rounds of crossing, planting and harvesting the best plants and discarding any that don’t come up to scratch. In Vietnam, for example, farmer “seed clubs” test new varieties in their fields and promote the best through “farmer field days”, where local farmers are invited to come and see the plants growing under their own conditions.

Miguel Sanchez-Garcia, a barley breeder at the International Center for Agricultural Research in the Dry Areas (ICARDA), examines a barley trial in Tunisia. Photo: LM Salazar / Crop Trust

Sharing Today and Forever, with Everybody

If breeders and farmers are to benefit from the results of pre-breeding, they must be able to get their hands on them.

 

BOLD helps make this happen by freely sharing all the relevant information – including characterization and evaluation data – via the Germinate platform developed by the James Hutton Institute.

 

Characterization data describes the plant in question physically and sometimes also in terms of its DNA, and helps identify it. Evaluation data includes yield, agronomic performance and stress resistances.

 

The data is crucial for BOLD and everybody who works on these crops. It helps scientists find plants that have the characteristics they are looking for and incorporate them into their breeding programs,” stresses Paul Shaw from James Hutton Institute, BOLD bioinformatics project leader.

 

Researchers and breeders can use Germinate to find plants with the exact traits they are looking for.

 

And they can then request them using the Genesys online platform for genebanks. All of the pre-bred plants generated under BOLD are available for distribution via the genebanks that safeguard these materials, most of which publish their data on Genesys.

Germinate stores and makes available all kinds of data, including passport data, genotypes and pedigrees of seed samples, genetic markers, data from evaluation trials, climate, geography, and more. Germinate also  provides tools to analyze and visualize the data.

Building Capacity, Strengthening Skills

Conserving and using crop diversity takes a wide range of knowledge, expertise and skills.

 

The BOLD Project is working with national genebanks, breeders, researchers, students and farmers to ensure that they have all they need, including:

  • Genebank management protocols and equipment.
  • The skills needed to perform crosses and backcrosses and use up-to-date research tools such as molecular markers.
  • Experimental designs for evaluating crop diversity.
  • Tools for data collection, analysis and visualization, such as GRIDScore from the James Hutton Institute.
  • Communication skills needed to promote awareness of the value of their work.
The Crop Trust's BOLD Project is working with the International Potato Center to select CWR-derived potatoes exhibiting late-blight resistance. Pictured here, Kenyan farmers place seeds in bags to indicate what traits they most prefer in potatoes. Photo: Mike Major / Crop Trust
Visual highlight

Fertility Specialists

Breeders carefully choose parents that have the characteristics they want in their future elite variety – high yield, disease resistance, drought tolerance or nutritional value. They then transfer pollen – the male reproductive cells – from the male parent to the female parent, a manual process that might involve using a small paintbrush.

 

This can be especially challenging as the different parent plants might not flower at the same time. Or the pollen might not want to germinate on the female parent. Or, if it goes that far, the resulting embryo might not survive to maturity, and the only way to get a viable plant is through in vitro culture – sort of “IVF for plants.”

Decisions. Decisions. Decisions.

Now’s your chance to put into practice what you have learned and try your hand at breeding a new variety to make farmers’ lives better. Good luck!

  1. Decide what you want to change

    Decide what you want to change in the crop you are working with – disease resistance? Yield? Drought tolerance?

  2. IDENTIFY CWR SEARCH in genebank collections. SEARCH online, in Genesys

    Identify “relatives” that have the characteristics that you are looking for. This usually means searching through genebank records, or a site like Genesys.

  3. GROW them & see

    Grow the “relatives” in your fields or greenhouse to see if they really have what you are looking for.

  4. CROSS CWR with farmer-ready varieties

    Cross the best of them with your “parent” of choice, usually a well-known local variety with matching characteristics.

    Success
    You get some viable seed. Go to step 5.

    Fail
    None of the crosses produce viable seed. Go back to step 4.

  5. SELECT offspring

    Select the offspring with the characteristics you are looking for, like disease resistance, plus good agronomic characteristics…

    • INTERESTING CHARACTERISTICS?
  6. BACKCROSS with parent or itself

    …and cross these with the parent again, or itself.

  7. FIELD TRIALS. Small plots → Large plots → multi-location

    Test the offspring again and again and again to find the plants that really meet your needs.

    • MEETS YOUR NEEDS?

      Trials identify lines with desired characteristics, e.g. drought tolerance or pest resistance and good agronomic characteristics.

  8. TEST with farmers.

    Now, test the “best of the best” plants under farmers’ conditions, often with farmers themselves choosing what they prefer to grow.

    • MEETS EXPECTATIONS?

      By this stage, you may have a new variety that farmers want to grow. But…

  9. REGISTER the variety

    you still have to prove to the authorities that it is at least as good as what farmers already have and will perform year in, year out before you can register it

  10. MAKE IT WIDELY AVAILABLE

    And make it widely available.

It’s a long, complex process of many steps, with lots of different people and skills involved.

We’ve heard about some of the challenges pre-breeders face in bringing new diversity into breeding programs. And what some adventurous breeders are doing with support from BOLD.

But let’s dig a little deeper into how these users of crop diversity differ